Dissecting human immune responses to pathogens and vaccines
Our laboratory investigates the two antigen receptors of human adaptive immunity — immunoglobulins and T cell receptors — and how they can be discovered and engineered to confer protection against infectious diseases and cancer. Using high-throughput cellular screens of human memory B cells and plasma cells, we have isolated potent and broadly neutralizing antibodies for the prophylaxis and treatment of infectious diseases, with a current focus on flaviviruses. In parallel, we continue to address fundamental aspects of the antibody response, such as the role of somatic mutations in affinity maturation, the relationship between infection and autoimmunity, and the diversification of antibodies through templated insertions of genomic DNA into antibody genes. We are now extending the same discovery and engineering logic from antibodies to T cell receptors. Combining immunopeptidomic mapping of naturally presented peptides, antigen-presenting cells engineered to display defined antigens or peptide–HLA complexes, and stringent in vitro selection that enriches for the highest-avidity receptors, we have built a pipeline to isolate self- or allo-restricted T cell receptors against widely presented tumour- and tissue-specific self-antigens for adoptive cell therapy. We also investigate fundamental aspects of the T cell response, including the rules of immunodominance and the specificity of regulatory T cells.
Projects
- Isolation and engineering of broadly neutralizing antibodies.
- Organization and dynamics of the memory T and B repertoire.
- The antibody response: role of somatic mutations and genomic DNA insertions.
- Development of a pipeline to isolate high-avidity T cell receptors directed against tumor antigens.
- Immunodominance in the CD8 response.
Publications (selected, last 10 years)
- Guidelines for T cell nomenclature
Masopust, D., et al.
Nat Rev Immunol. 2025. - Clonal analysis of SepSecS-specific B and T cells in autoimmune hepatitis
Kramer, M., et al.
J Clin Invest. 2025;135(2). - Dual Activation-Induced Marker Combinations Efficiently Identify and Discern Antigen-Specific and Bystander-Activated Human CD4(+) T Cells
Ceraolo, M. G., et al.
Eur J Immunol. 2025;55(2):e202451404. - A potent pan-sarbecovirus neutralizing antibody resilient to epitope diversification
Rosen, L. E., et al.
Cell. 2024 Dec;187(25):7196-7213.e7126. - Site-specific serology unveils cross-reactive monoclonal antibodies targeting influenza A hemagglutinin epitopes
Paparoditis, P. C. G., et al.
Eur J Immunol. 2024 Oct;54(10):e2451045. - A pan-influenza antibody inhibiting neuraminidase via receptor mimicry
Momont, C., et al.
Nature. 2023 Jun;618(7965):590-597. - Maturation of SARS-CoV-2 Spike-specific memory B cells drives resilience to viral escape
Marzi, R., et al.
iScience. 2023 Jan;26(1):105726. - Clonal composition and persistence of antigen-specific circulating T follicular helper cells
Hu, M., et al.
Eur J Immunol. 2023 Feb;53(2):e2250190. - Neutralization, effector function and immune imprinting of Omicron variants
Addetia, A., et al.
Nature. 2023 Sep;621(7979):592-601. - Structure, receptor recognition, and antigenicity of the human coronavirus CCoV-HuPn-2018 spike glycoprotein
Tortorici, M. A., et al.
Cell. 2022 Jun;185(13):2279-2291.e2217. - Clonal structure, stability and dynamics of human memory B cells and circulating plasmablasts
Phad, G. E., et al.
Nat Immunol. 2022 Jul;23(7):1076-1085. - ACE2-binding exposes the SARS-CoV-2 fusion peptide to broadly neutralizing coronavirus antibodies
Low, J. S., et al.
Science. 2022 Aug;377(6607):735-742. - Different classes of genomic inserts contribute to human antibody diversity
Lebedin, M., et al.
Proc Natl Acad Sci U S A. 2022 Sep;119(36):e2205470119. - Broadly neutralizing antibodies overcome SARS-CoV-2 Omicron antigenic shift
Cameroni, E., et al.
Nature. 2022 Feb;602(7898):664-670. - Structural basis of LAIR1 targeting by polymorphic Plasmodium RIFINs
Xu, K., et al.
Nat Commun. 2021 Jul;12(1):4226. - Interprotomer disulfide-stabilized variants of the human metapneumovirus fusion glycoprotein induce high titer-neutralizing responses
Stewart-Jones, G. B. E., et al.
Proc Natl Acad Sci U S A. 2021 Sep;118(39). - Exceptionally potent human monoclonal antibodies are effective for prophylaxis and treatment of tetanus in mice
Pirazzini, M., et al.
J Clin Invest. 2021 Nov;131(22). - Broad betacoronavirus neutralization by a stem helix-specific human antibody
Pinto, D., et al.
Science. 2021 Sep;373(6559):1109-1116. - Integrated longitudinal immunophenotypic, transcriptional and repertoire analyses delineate immune responses in COVID-19 patients
Notarbartolo, S., et al.
Sci Immunol. 2021 Sep;6(62). - Clonal analysis of immunodominance and cross-reactivity of the CD4 T cell response to SARS-CoV-2
Low, J. S., et al.
Science. 2021 Jun;372(6548):1336-1341. - Lectins enhance SARS-CoV-2 infection and influence neutralizing antibodies
Lempp, F. A., et al.
Nature. 2021 Nov;598(7880):342-347. - Single-cell profiling of myasthenia gravis identifies a pathogenic T cell signature
Ingelfinger, F., et al.
Acta Neuropathol. 2021 Jun;141(6):901-915. - Cooperation Between Systemic IgG1 and Mucosal Dimeric IgA2 Monoclonal Anti-HIV Env Antibodies: Passive Immunization Protects Indian Rhesus Macaques Against Mucosal SHIV Challenges
Gong, S., et al.
Front Immunol. 2021 Jun;12:705592. - Machine learning analyses of antibody somatic mutations predict immunoglobulin light chain toxicity
Garofalo, M., et al.
Nat Commun. 2021 Jan;12(1):3532. - A rationally designed oral vaccine induces immunoglobulin A in the murine gut that directs the evolution of attenuated Salmonella variants
Diard, M., et al.
Nat Microbiol. 2021 Jul;6(7):830-841. - Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies
Collier, D. A., et al.
Nature. 2021 Apr;593(7857):136-141. - Structural basis of malaria RIFIN binding by LILRB1-containing antibodies
Chen, Y., et al.
Nature. 2021 Apr;592(7855):639-643. - Broadly reactive human CD4(+) T cells against Enterobacteriaceae are found in the naive repertoire and are clonally expanded in the memory repertoire
Cassotta, A., et al.
Eur J Immunol. 2021 Mar;51(3):648-661. - Clonally expanded EOMES(+) Tr1-like cells in primary and metastatic tumors are associated with disease progression
Bonnal, R. J. P., et al.
Nat Immunol. 2021 Jun;22(6):735-745. - A single T cell epitope drives the neutralizing anti-drug antibody response to natalizumab in multiple sclerosis patients.
Cassotta A, Mikol V, Bertrand T, Pouzieux S, Le Parc J, Ferrari P, Dumas J, Auer M, Deisenhammer F, Gastaldi M, Franciotta D, Silacci-Fregni C, Fernandez Rodriguez B, Giacchetto-Sasselli I, Foglierini M, Jarrossay D, Geiger R, Sallusto F, Lanzavecchia A, Piccoli L.
Nat Med. 2019 Sep;25(9):1402-1407. doi: 10.1038/s41591-019-0568-2. - Induction of Potent Neutralizing Antibody Responses by a Designed Protein Nanoparticle Vaccine for Respiratory Syncytial Virus.
Marcandalli J, Fiala B, Ols S, Perotti M, de van der Schueren W, Snijder J, Hodge E, Benhaim M, Ravichandran R, Carter L, Sheffler W, Brunner L, Lawrenz M, Dubois P, Lanzavecchia A, Sallusto F, Lee KK, Veesler D, Correnti CE, Stewart LJ, Baker D, Loré K, Perez L, King NP.
Cell. 2019 Mar 7;176(6):1420-1431.e17. doi: 10.1016/j.cell.2019.01.046. - Persistent Antibody Clonotypes Dominate the Serum Response to Influenza over Multiple Years and Repeated Vaccinations.
Lee J, Paparoditis P, Horton AP, Frühwirth A, McDaniel JR, Jung J, Boutz DR, Hussein DA, Tanno Y, Pappas L, Ippolito GC, Corti D, Lanzavecchia A, Georgiou G.
Cell Host Microbe. 2019 Mar 13;25(3):367-376.e5. doi: 10.1016/j.chom.2019.01.010. Epub 2019 Feb 19. - Unexpected Receptor Functional Mimicry Elucidates Activation of Coronavirus Fusion.
Walls AC, Xiong X, Park YJ, Tortorici MA, Snijder J, Quispe J, Cameroni E, Gopal R, Dai M, Lanzavecchia A, Zambon M, Rey FA, Corti D, Veesler D.
Cell. 2019 Feb 21;176(5):1026-1039.e15. doi: 10.1016/j.cell.2018.12.028. Epub 2019 Jan 31. - The Antibody Response to Plasmodium falciparum: Cues for Vaccine Design and the Discovery of Receptor-Based Antibodies.
Tan J, Piccoli L, Lanzavecchia A.
Annu Rev Immunol. 2019 Apr 26;37:225-246. doi: 10.1146/annurev-immunol-042617-053301. Epub 2018 Dec 19. Review. - Structure-based design of a quadrivalent fusion glycoprotein vaccine for human parainfluenza virus types 1-4.
Stewart-Jones GBE, Chuang GY, Xu K, Zhou T, Acharya P, Tsybovsky Y, Ou L, Zhang B, Fernandez-Rodriguez B, Gilardi V, Silacci-Fregni C, Beltramello M, Baxa U, Druz A, Kong WP, Thomas PV, Yang Y, Foulds KE, Todd JP, Wei H, Salazar AM, Scorpio DG, Carragher B, Potter CS, Corti D, Mascola JR, Lanzavecchia A, Kwong PD.
Proc Natl Acad Sci U S A. 2018 Nov 27;115(48):12265-12270. doi: 10.1073/pnas.1811980115. Epub 2018 Nov 12. - An Unbiased Screen for Human Cytomegalovirus Identifies Neuropilin-2 as a Central Viral Receptor.
Martinez-Martin N, Marcandalli J, Huang CS, Arthur CP, Perotti M, Foglierini M, Ho H, Dosey AM, Shriver S, Payandeh J, Leitner A, Lanzavecchia A, Perez L, Ciferri C.
Cell. 2018 Aug 23;174(5):1158-1171.e19. doi: 10.1016/j.cell.2018.06.028. Epub 2018 Jul 26. - A public antibody lineage that potently inhibits malaria infection through dual binding to the circumsporozoite protein.
Tan, J., B.K. Sack, D. Oyen, I. Zenklusen, L. Piccoli, S. Barbieri, M. Foglierini, C.S. Fregni, J. Marcandalli, S. Jongo, S. Abdulla, L. Perez, G. Corradin, L. Varani, F. Sallusto, B.K.L. Sim, S.L. Hoffman, S.H.I. Kappe, C. Daubenberger, I.A. Wilson, and A. Lanzavecchia.
Nat Med. 2018 24:401-407 doi:10.1038/nm.4513. - Public antibodies to malaria antigens generated by two LAIR1 insertion modalities.
Pieper, K., J. Tan, L. Piccoli, M. Foglierini, S. Barbieri, Y. Chen, C. Silacci Fregni, T. Wolf, D. Jarrossay, M. Anderle, A. Abdi, F.M. Ndungu, O.K. Doumbo, B. Traore, T.M. Tran, S. Jongo, I. Zenklusen, P.D. Crompton, C. Daubenberger, P.C. Bull, F. Sallusto, and A. Lanzavecchia..
Nature 2017. 548:597-601. doi:10.1038/nature23670. - L-Arginine Modulates T Cell Metabolism and Enhances Survival and Anti-tumor Activity.
Geiger, R., J.C. Rieckmann, T. Wolf, C. Basso, Y. Feng, T. Fuhrer, M. Kogadeeva, P. Picotti, F. Meissner, M. Mann, N. Zamboni, F. Sallusto, and A. Lanzavecchia.
Cell 2016 167:829-842. - Structure and Function Analysis of an Antibody Recognizing All Influenza A Subtypes
Kallewaard, N.L., D. Corti, P.J. Collins, U. Neu, J.M. McAuliffe, E. Benjamin, L. Wachter-Rosati, F.J. Palmer-Hill, A.Q. Yuan, P.A. Walker, M.K. Vorlaender, S. Bianchi, B. Guarino, A. De Marco, F. Vanzetta, G. Agatic, M. Foglierini, D. Pinna, B. Fernandez-Rodriguez, A. Fruehwirth, C. Silacci, R.W. Ogrodowicz, S.R. Martin, F. Sallusto, J.A. Suzich, A. Lanzavecchia, Q. Zhu, S.J. Gamblin, and J.J. Skehel
Cell. 2016 166: 596-608. - Specificity, cross-reactivity and function of antibodies elicited by Zika virus infection
Stettler, K., M. Beltramello, D.A. Espinosa, V. Graham, A. Cassotta, S. Bianchi, F. Vanzetta, A. Minola, S. Jaconi, F. Mele, M. Foglierini, M. Pedotti, L. Simonelli, S. Dowall, B. Atkinson, E. Percivalle, C.P. Simmons, L. Varani, J. Blum, F. Baldanti, E. Cameroni, R. Hewson, E. Harris, A. Lanzavecchia, F. Sallusto, and D. Corti.
Science 2016, 353: 823-26. - Protective Monotherapy Against Lethal Ebola Virus Infection by a Potently Neutralizing Antibody.
Corti D, Misasi J, Mulangu S, Stanley DA, Kanekiyo M, Wollen S, Ploquin A, Doria-Rose NA, Staupe RP, Bailey M, Shi W, Choe M, Marcus H, Thompson EA, Cagigi A, Silacci C, Fernandez-Rodriguez B, Perez L, Sallusto F, Vanzetta F, Agatic G, Cameroni E, Kisalu N, Gordon I, Ledgerwood JE, Mascola JR, Graham BS, Muyembe-Tamfun JJ, Trefry JC, Lanzavecchia A, Sullivan NJ.
Science 351: 1339-42. - A LAIR1 insertion generates broadly reactive antibodies against malaria variant antigens.
Tan J, Pieper K, Piccoli L, Abdi A, Foglierini M, Geiger R, Tully CM, Jarrossay D, Ndungu FM, Wambua J, Bejon P, Fregni CS, Fernandez-Rodriguez B, Barbieri S, Bianchi S, Marsh K, Thathy V, Corti D, Sallusto F, Bull P, Lanzavecchia A.
Nature 2016 529:105-109 - Prophylactic and postexposure efficacy of a potent human monoclonal antibody against MERS coronavirus.
Corti D, Zhao J, Pedotti M, Simonelli L, Agnihothram S, Fett C, Fernandez-Rodriguez B, Foglierini M, Agatic G, Vanzetta F, Gopal R, Langrish CJ, Barrett NA, Sallusto F, Baric RS, Varani L, Zambon M, Perlman S, Lanzavecchia A.
Proc Natl Acad Sci U S A 2016. 112: 10473-8







