Interplay between HIV and CD4 T cell subsets
The HIV pandemic is one of the defining public health crises of our time with more than 37 million people living with HIV/AIDS worldwide. A cure or effective vaccine remain elusive despite 35 years of intense research. Although ART effectively suppresses viral replication, life-long treatment is required since ART fails to cure the disease. One of the causes of this failure is that HIV integrates its genome in the chromosomal DNA of long-lived host immune cells such as memory CD4 T cells. Indeed, infected CD4 T lymphocytes harboring a transcriptionally silent provirus form the latent HIV reservoir, which evades immune surveillance and persists over many years despite effective ART. In addition, HIV positive individuals on ART, with a controlled viremia, often experience general inflammation and immune-dysregulation that make them more susceptibile to non–AIDS-defining illnesses like cardiovascular disease, kidney disease, metabolic alteration and non–AIDS-defining cancers. Our research focuses on the study of the interplay between HIV and the immune system in both acute and chronic phases. We aim to characterize how HIV establishes latency in the different CD4 T cell subsets with a focus on CD4 T stem cell memory, the least differentiated of the human memory T cells subsets. We are also investigating how events in early acute infection and reservoir size influence CD4 T cell reconstitution and immune dysfunction.
SARS-CoV-2 can cause severe pneumonia characterized by massive infiltration of inflammatory cells, including monocytes and expanded clones of T cells massive production of pro-inflammatory cytokines, and extensive tissue damage. It is not completely characterized how monocytes interact with the virus, preliminary data on SARS-CoV2 suggest that the infection may be abortive with consequent high expression of pro-inflammatory cytokines but delayed expression of type I interferon (IFN-I), fundamental for initiation of anti-viral innate immune responses. In our lab we aim to phenotypically and functionally characterize monocytes in COVID19 patients as well as study the interplay between these cells and SARS-CoV2.
Projects
- HIV latency establishment in the different CD4 T cell subsets
- Role of CD4 T memory stem in HIV immunopathogenesis
- Interplay between monocytes and SARS-CoV2
Team
Nome / Name | Ruolo / Role | |
---|---|---|
Matteo Giacomo Centazzo | PhD Student | centazzo@ingm.org |
Carola Miuccio | Bioinformatician | miuccio@ingm.org |
Alessandra Montemurro | MS Thesis Student | montemurro@ingm.org |
Susanna Scaglioni | PhD Student | scaglioni@ingm.org |
Publications
- Development of an HIV reporter virus that identifies latently infected CD4+ T cells.
Kim EH, Manganaro L, Schotsaert M, Brown BD, Mulder LCF, Simon V.
Cell Rep Methods. 2022 Jun 13;2(6):100238. - Immunosuppressant Treatment in Rheumatic Musculoskeletal Diseases Does Not Inhibit Elicitation of Humoral Response to SARS-CoV-2 Infection and Preserves Effector Immune Cell Populations.
Favalli A, Favalli EG, Gobbini A, Zagato E, Bombaci M, Maioli G, Pesce E, Donnici L, Gruarin P, Biggioggero M, Curti S, Manganaro L, Marchisio E, Bevilacqua V, Martinovic M, Fabbris T, Sarnicola ML, Crosti M, Marongiu L, Granucci F, Notarbartolo S, Bandera A, Gori A, De Francesco R, Abrignani S, Caporali R, Grifantini R.
Front Immunol. 2022 Jun 10;13:873195. - Heterogeneity of Latency Establishment in the Different Human CD4+ T Cell Subsets Stimulated with IL-15.
Butta GM, Bozzi G, Gallo G, Copaloni G, Cordiglieri C, Crosti M, Mancino M, Prati D, Simon V, Gori A, Bandera A, De Francesco R, Manganaro L.
Journal of Virology. 2022 May 25;96(10):e0037922. - Synthetic carbohydrate-binding agents neutralize SARS-CoV-2 by inhibiting binding of the spike protein to ACE2.
Francesconi O, Donnici L, Fragai M, Pesce E, Bombaci M, Fasciani A, Manganaro L, Conti M, Grifantini R, De Francesco R, Nativi C, Roelens S.
iScience. 2022 May 20;25(5):104239. - ISG15 deficiency restricts HIV-1 infection.
Jurczyszak D, Manganaro L, Buta S, Gruber C, Martin-Fernandez M, Taft J, Patel RS, Cipolla M, Alshammary H, Mulder LCF, Sachidanandam R, Bogunovic D, Simon V.
PLoS Pathog. 2022 Mar 25;18(3):e1010405. - Administration of aerosolized SARS-CoV-2 to K18-hACE2 mice uncouples respiratory infection from fatal neuroinvasion.
Fumagalli V, Ravà M, Marotta D, Di Lucia P, Laura C, Sala E, Grillo M, Bono E, Giustini L, Perucchini C, Mainetti M, Sessa A, Garcia-Manteiga JM, Donnici L, Manganaro L, Delbue S, Broccoli V, De Francesco R, D’Adamo P, Kuka M, Guidotti LG, Iannacone M.
Sci Immunol. 2022 Jan 28;7(67) - Transient increase of plasma HIV RNA after COVID-19 vaccination with mRNA-1273.
Bozzi G, Lombardi A, Ludovisi S, Muscatello A, Manganaro L, Cattaneo D, Bandera A, Gori A.
Int J Infect Dis. 2021 Dec;113:125-126. - Anti-spike antibodies and neutralising antibody activity in people living with HIV vaccinated with COVID-19 mRNA-1273 vaccine: a prospective single-centre cohort study.
Lombardi A, Butta GM, Donnici L, Bozzi G, Oggioni M, Bono P, Matera M, Consonni D, Ludovisi S, Muscatello A, Ceriotti F, Conti M, Scaglioni S, Gallo G, Scarpa E, Letko M, Abrignani S, Grifantini R, De Francesco R, Gori A, Manganaro L, Bandera A.
Lancet Reg Health Eur. 2021 Dec 23:100287. - Novel interferon‑sensitive genes unveiled by correlation‑driven gene selection and systems biology
Cheroni C, Manganaro L, Donnici L, Bevilacqua V, Bonnal JP, Rossi RL, De Francesco R.
Scientific Reports, 2021. 11:18043 - Integrated longitudinal immunophenotypic, transcriptional and repertoire analyses delineate immune responses in COVID-19 patients.
Notarbartolo S, Ranzani V, Bandera A, Gruarin P, Bevilacqua V, Putignano AR, Gobbini A, Galeota E, Manara C, Bombaci M, Pesce E, Zagato E, Favalli A, Sarnicola ML, Curti S, Crosti M, Martinovic M, Fabbris T, Marini F, Donnici L, Lorenzo M, Mancino M, Ungaro R, Lombardi A, Mangioni D, Muscatello A, Aliberti S, Blasi F, De Feo T, Prati D, Manganaro L, Granucci F, Lanzavecchia A, De Francesco R, Gori A, Grifantini R, Abrignani S.
Sci Immunol. 2021 Aug 10;6(62):eabg5021. doi: 10.1126/sciimmunol.abg5021.PMID: 34376481 - Chromosomally integrated human herpesvirus 6 (ci-HHV-6) in autologous bone marrow transplant recipients: are we missing a reactivation or is it just mimicking?
Peri AM, Cagliani R, Bozzi G, Pompa A, Manganaro L, Baldini L, Gori A, Bandera A.
J Clin Virol. 2021 Jun;139:104823. doi: 10.1016/j.jcv.2021.104823. Epub 2021 Apr 16. PMID: 3391013 - IL-15 regulates susceptibility of CD4+ T cells to HIV infection.
Manganaro L, Hong P, Hernandez MM, Argyle D, Mulder LCF, Potla U, Diaz-Griffero F, Lee B, Fernandez-Sesma A, Simon V.
Proc Natl Acad Sci U S A (2018) 115:E9659-E9667 - HIV-1 Infection of Primary CD4+ T Cells Regulates the Expression of Specific Human Endogenous Retrovirus HERV-K (HML-2) Elements.
Young GR, Terry SN, Manganaro L, Cuesta-Dominguez A, Deikus G, Bernal-Rubio D, Campisi L, Fernandez-Sesma A, Sebra R, Simon V, Mulder LCF.J Virol. 2017 Dec 14;92(1):e01507-17. doi: 10.1128/JVI.01507-17. Print 2018 Jan 1.PMID: 29046457 - Expression of HERV-K108 envelope interferes with HIV-1 production.
Terry SN, Manganaro L, Cuesta-Dominguez A, Brinzevich D, Simon V, Mulder LCF.
Virology. 2017 Sep;509:52-59. doi: 10.1016/j.virol.2017.06.004. Epub 2017 Jun 9. PMID: 28605635 - A Cas9 Ribonucleoprotein Platform for Functional Genetic Studies of HIV-Host Interactions in Primary Human T Cells.
Hultquist JF, Schumann K, Woo JM, Manganaro L, McGregor MJ, Doudna J, Simon V, Krogan NJ, Marson A.
Cell Rep. 2016 Oct 25;17(5):1438-1452. doi: 10.1016/j.celrep.2016.09.080. PMID: 27783955 - Targeting Viral Proteostasis Limits Influenza Virus, HIV, and Dengue Virus Infection.
Heaton NS, Moshkina N, Fenouil R, Gardner TJ, Aguirre S, Shah PS, Zhao N, Manganaro L, Hultquist JF, Noel J, Sachs D, Hamilton J, Leon PE, Chawdury A, Tripathi S, Melegari C, Campisi L, Hai R, Metreveli G, Gamarnik AV, García-Sastre A, Greenbaum B, Simon V, Fernandez-Sesma A, Krogan NJ, Mulder LCF, van Bakel H, Tortorella D, Taunton J, Palese P, Marazzi I.
Immunity. 2016 Jan 19;44(1):46-58. doi: 10.1016/j.immuni.2015.12.017. PMID: 26789921 - BIRC2/cIAP1 is a Negative Regulator of HIV-1 Transcription and Can Be Targeted by Smac Mimetics to Promote Reversal of Viral Latency.
Pache L, Dutra MS, Spivak AM, Marlett JM, Murry JP, Hwang Y, Maestre AM, Manganaro L, Vamos M, Teriete P, Martins LJ, König R, Simon V, Bosque A, Fernandez-Sesma A, Cosford ND, Bushman FD, Young JA, Planelles V, Chanda SK.
Cell Host Microbe. 2015 Sep 9;18(3):345-53. doi: 10.1016/j.chom.2015.08.009. PMID: 26355217 - HIV Vpu Interferes with NF-κB Activity but Not with Interferon Regulatory Factor 3.
Manganaro L, de Castro E, Maestre AM, Olivieri K, García-Sastre A, Fernandez-Sesma A, Simon V.
J Virol. 2015 Oct;89(19):9781-90. doi: 10.1128/JVI.01596-15. Epub 2015 Jul 15. PMID: 26178989 - Nuclear architecture dictates HIV-1 integration site selection.
Marini B, Kertesz-Farkas A, Ali H, Lucic B, Lisek K, Manganaro L, Pongor S, Luzzati R, Recchia A, Mavilio F, Giacca M, Lusic M.
Nature. 2015 May 14;521(7551):227-31. doi: 10.1038/nature14226. Epub 2015 Mar 2. PMID: 25731161 - Tumor suppressor cylindromatosis (CYLD) controls HIV transcription in an NF-κB-dependent manner.
Manganaro L, Pache L, Herrmann T, Marlett J, Hwang Y, Murry J, Miorin L, Ting AT, König R, García-Sastre A, Bushman FD, Chanda SK, Young JA, Fernandez-Sesma A, Simon V.
J Virol. 2014 Jul;88(13):7528-40. doi: 10.1128/JVI.00239-14. Epub 2014 Apr 23. PMID: 24760882 - Concerted action of cellular JNK and Pin1 restricts HIV-1 genome integration to activated CD4+ T lymphocytes.
Manganaro L, Lusic M, Gutierrez MI, Cereseto A, Del Sal G, Giacca M.
Nat Med. 2010 Mar;16(3):329-33. doi: 10.1038/nm.2102. Epub 2010 Feb 21. PMID: 20173753 - The histone chaperone protein Nucleosome Assembly Protein-1 (hNAP-1) binds HIV-1 Tat and promotes viral transcription.
Vardabasso C, Manganaro L, Lusic M, Marcello A, Giacca M.
Retrovirology. 2008 Jan 28;5:8. doi: 10.1186/1742-4690-5-8. PMID: 18226242 Free PMC article. - Acetylation of HIV-1 integrase by p300 regulates viral integration.
Cereseto A, Manganaro L, Gutierrez MI, Terreni M, Fittipaldi A, Lusic M, Marcello A, Giacca M.
EMBO J. 2005 Sep 7;24(17):3070-81. doi: 10.1038/sj.emboj.7600770. Epub 2005 Aug 11. PMID: 16096645